How to Prevent Payroll Fraud and Strengthen Payroll Security


Payroll is one of the most important responsibilities for any business. Employees expect to be paid correctly and on time, but payroll fraud in business can quietly slip through undetected. Whether it’s fake employees, unauthorized direct deposit changes, or padded timesheets, even small problems can add up to big monetary losses if they go undetected.

In this guide, we’ll cover the most common payroll fraud risks, how to spot warning signs early, and practical payroll fraud prevention strategies to keep your business, employees, and payroll process safe.

Why Payroll Fraud Is a Growing Concern

As more companies shift to digital payroll systems, cloud-based software, and remote employment, fraudsters have found new ways to exploit weak processes and human error.

Payroll fraud constitutes an estimated 9–10% of all occupational fraud cases, as per the Association of Certified Fraud Examiners (ACFE) 2024 Report to the Nations. The median financial loss per fraud incident is US$50,000. Even more concerning is the fact that the average payroll fraud scheme remains undetected for 18 months, allowing fraudsters plenty of time to cause significant damage before they are discovered.

For small and mid-sized businesses, the effects can be more than just lost money. Payroll fraud can also result in:

  • Employee distrust when payroll mistakes occur
  • Tax reporting and payroll compliance issues
  • Regulatory penalties
  • Cash flow problems
  • Damage to the company’s reputation

What Is Payroll Fraud?

Payroll fraud is a form of fraud in which an individual intentionally changes the payroll process to receive money or benefits they are not entitled to. The fraud could be committed by an employee, payroll administrator, contractor, or even an external cybercriminal.

Sometimes the schemes are simple, like claiming hours of overtime never worked. Some involve sophisticated cyberattacks that redirect employee wages into fake bank accounts.

The Most Common Types of Payroll Fraud

Payroll fraud can take many forms, but a handful of schemes account for the majority of reported cases.

1. Ghost Employee Fraud

A ghost employee is an employee who is on the payroll system but is not actually working for the company. Sometimes the person is entirely fictional. In other cases, fraudsters continue to pay a former employee whose records were never purged after they left the business.

Instead of being paid as legitimate wages to an employee, the payments are diverted to a bank account controlled by the fraudster.

2. Timesheet and Overtime Fraud

Sometimes the fraud comes from inflating legitimate payroll records.

Examples include:

  • Reporting hours that were never worked
  • Claiming unauthorized overtime
  • Buddy punching or clocking in for another employee
  • Increasing commission or bonus figures
  • Altering shift records

These smaller fraudulent claims may not seem like much on their own, but over months or years they can add up to a significant financial loss.

3. Expense Reimbursement Fraud

Payroll is often connected to expense fraud because payroll systems frequently process reimbursements.

Employees may attempt to:

  • Submit duplicate expense claims
  • Alter receipts
  • Inflate travel or meal costs
  • Claim expenses that never occurred

Without the proper approval processes, these payments can easily get caught up in regular payroll.

4. Direct Deposit and Payroll Diversion Fraud

Criminals impersonate employees and sendlegitimate-lookingg emails asking to urgently change their direct deposit information. If payroll staff update the banking details without confirming the request, the next paycheck will be deposited directly into the scammer’s account.

Business Email Compromise (BEC) attacks are comparable. Scammers impersonate executives or HR leaders and rush payroll teams to make immediate payment changes or provide sensitive payroll data.

Companies without verification procedures are particularly vulnerable because these requests often appear legitimate.

5. Unauthorized Payroll Changes

Someone with payroll access may intentionally change:

  • Hourly pay rates
  • Salary amounts
  • Commission percentages
  • Bonus payments
  • Tax withholding information
  • Benefit deductions

If those changes aren’t reviewed by another person, they may go unnoticed for several payroll cycles.

How to Prevent Payroll Fraud

Here are some practical strategies every business should consider.

1. Separate Payroll Responsibilities

One of the biggest mistakes you can make as a business is to have one person in charge of the entire payroll process. Splitting payroll duties creates accountability and makes it much easier to spot suspicious activity.

2. Verify Every Payroll Change

Before changing direct deposit information, salary adjustments, or tax withholding information, verify the request using a trusted method of communication. A phone call or face-to-face confirmation can prevent an expensive mistake.

This is especially important as phishing emails and executive impersonation scams continue to increase. Criminals often rely on urgency to pressure payroll staff into acting without verification.

3. Perform Regular Payroll Audits

Even reviewing a sample of employee records each month can reveal issues such as:

  • Duplicate employees
  • Unexpected overtime payments
  • Unauthorized salary increases
  • Inactive employees still receiving pay
  • Unusual reimbursement claims

Regular audits also help improve payroll compliance by making sure payroll records are current and accurate.

4. Use Secure Payroll Software

A secure payroll system can help businesses:

  • Restrict user access based on job roles
  • Track every payroll change with audit logs
  • Flag unusual transactions
  • Automate payroll calculations
  • Reduce manual data entry errors

It’s also good practice for businesses to keep payroll software updated to protect against newly discovered security vulnerabilities.

5. Enable Multi-Factor Authentication

Multi-factor authentication (MFA) is a security process where users verify their identity using a second factor like a mobile authentication app or verification code.

With MFA, even if login credentials are stolen through phishing attacks, it is much harder for unauthorized users to access payroll systems.

With the rise of cybercrime, MFA should be a standard security practice for any business that handles employee payroll.

6. Train Employees to Recognize Payroll Scams

Training should cover topics such as:

  • Recognizing phishing emails
  • Identifying suspicious payment requests
  • Protecting login credentials
  • Reporting unusual payroll activity
  • Verifying requests before sharing sensitive information

Regular awareness training means employees can respond with greater confidence when they encounter potential fraud attempts.

7. Restrict Access to Sensitive Payroll Information

Companies should work on a least privilege basis, so employees have access to the payroll information needed for their job only.

Restricting access helps to safeguard employee data and decreases the chances of unauthorized modifications to payroll.

8. Create Clear Payroll Policies

Your payroll procedures should clearly explain:

  • Who can approve payroll changes
  • How direct deposit updates are verified
  • How overtime is approved
  • How expenses are submitted
  • How payroll records are reviewed
  • How employees report suspicious activity

If you can get everyone to follow the same documented process, then it becomes much harder for fraudulent transactions to slip through the cracks.

Is It Time to Review Your Payroll Process?

You may want to review your payroll system if you:

  • Process payroll manually or use outdated systems
  • Have one person responsible for the entire payroll process
  • Frequently update employee banking information
  • Are growing quickly and hiring more employees
  • Have experienced payroll errors or security concerns
  • Need additional support with payroll compliance
  • Want stronger payroll fraud prevention practices without adding administrative work

Even if you’ve never had payroll fraud in your business, reviewing your internal controls can help you uncover weaknesses before they become costly problems.

Protect Your Business with OEM America

With more than 25 years of experience, OEM America can help your business strengthen payroll security, improve payroll compliance, and reduce payroll risks with reliable HR and payroll support. We are a proud NAPEO member and a BBB Accredited Business that helps employers build more secure payroll processes with confidence. Learn how we can help you protect your business. Schedule a free consultation today.

Frequently Asked Questions

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A: The most common schemes are ghost employees, false claims for wages or overtime, expense reimbursement fraud, and increasingly, fake direct deposit change requests sent via phishing emails posing as real employees.

A: Some of the best means of detecting fraud include regular audits, such as surprise checks on random samples of employees, exception reporting that alerts management to unusual pay or hours worked, and review of all direct deposit changes for verification.

A: Risk is significantly reduced by separating payroll duties so that no one person has total control, using multi-factor authentication on payroll systems, verifying direct deposit changes by phone, and training employees to look for phishing attempts.

A: Smaller businesses tend to have fewer internal controls, smaller payroll teams, and less separation between the people who process payments and the people who approve payments, which means there’s more opportunity for fraud to go unnoticed for a longer period of time.

A: Not necessarily. Secure payroll software with encryption and multi-factor authentication is helpful, but many of the most effective safeguards, like segregation of duties, verification calls and regular audits, cost little to implement and rely primarily on consistent process discipline.


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